Client Configuration

Once your S3 Documentation MCP server is running, configure your MCP client to connect to it.

Prerequisites

• Server running on http://localhost:3000 (default)
• Server health check passes: curl http://localhost:3000/health

Cursor

Configuration File

Edit your Cursor MCP configuration file:

~/.cursor/mcp.json

Basic Configuration (No Auth)

{
  "mcpServers": {
    "doc": {
      "type": "streamable-http",
      "url": "http://127.0.0.1:3000/mcp",
      "note": "S3 Documentation RAG Server"
    }
  }
}

With Authentication

{
  "mcpServers": {
    "doc": {
      "type": "streamable-http",
      "url": "http://127.0.0.1:3000/mcp",
      "headers": {
        "Authorization": "Bearer your-secret-key"
      },
      "note": "S3 Documentation RAG Server with auth"
    }
  }
}

Multiple Servers

You can configure multiple MCP servers:

{
  "mcpServers": {
    "docs": {
      "type": "streamable-http",
      "url": "http://127.0.0.1:3000/mcp",
      "note": "Product Documentation"
    },
    "api-docs": {
      "type": "streamable-http",
      "url": "http://127.0.0.1:3001/mcp",
      "note": "API Documentation"
    }
  }
}

Restart Cursor

After editing the configuration:

1. Save the file
2. Restart Cursor
3. Open the MCP panel to verify the connection

Claude Desktop

Configuration Files

macOS:

~/Library/Application Support/Claude/claude_desktop_config.json

Windows:

%APPDATA%/Claude/claude_desktop_config.json

Linux:

~/.config/Claude/claude_desktop_config.json

Basic Configuration (No Auth)

{
  "mcpServers": {
    "doc": {
      "type": "streamable-http",
      "url": "http://127.0.0.1:3000/mcp",
      "note": "S3 Documentation RAG Server"
    }
  }
}

With Authentication

{
  "mcpServers": {
    "doc": {
      "type": "streamable-http",
      "url": "http://127.0.0.1:3000/mcp",
      "headers": {
        "Authorization": "Bearer your-secret-key"
      },
      "note": "S3 Documentation RAG Server with auth"
    }
  }
}

Restart Claude Desktop

After editing the configuration:

1. Save the file
2. Quit Claude Desktop completely
3. Restart the application
4. Verify the MCP server appears in the available tools

Claude Code (CLI)

Add via Command Line

The fastest way to add the MCP server to Claude Code:

claude mcp add doc --transport http http://127.0.0.1:3000/mcp

With Authentication

claude mcp add doc --transport http http://127.0.0.1:3000/mcp \
  --header "Authorization: Bearer your-secret-key"

Verify

After adding, verify the server is connected:

claude mcp list

You should see doc listed with 3 tools available.

Remove

To remove the MCP server from Claude Code:

claude mcp remove doc

Docker Configuration

If running the MCP server in Docker, use the appropriate host:

Docker on macOS/Windows

{
  "mcpServers": {
    "doc": {
      "type": "streamable-http",
      "url": "http://host.docker.internal:3000/mcp"
    }
  }
}

Docker on Linux

{
  "mcpServers": {
    "doc": {
      "type": "streamable-http",
      "url": "http://172.17.0.1:3000/mcp"
    }
  }
}

Or use the host’s IP address directly.

Remote Server

If your MCP server is running on a remote host:

{
  "mcpServers": {
    "doc": {
      "type": "streamable-http",
      "url": "https://mcp.example.com/mcp",
      "headers": {
        "Authorization": "Bearer your-secret-key"
      },
      "note": "Remote S3 Documentation Server"
    }
  }
}

Caution

Always enable authentication (ENABLE_AUTH=true) for remote servers!

Custom Port

If your server runs on a different port:

# In .env
PORT=8080

{
  "mcpServers": {
    "doc": {
      "type": "streamable-http",
      "url": "http://127.0.0.1:8080/mcp"
    }
  }
}

Verification

Check Connection

After configuring and restarting your client:

In Cursor:

1. Open the MCP panel (View → MCP)
2. Verify “doc” server appears
3. Check for 3 tools: search_documentation, refresh_index, get_full_document
4. Check for available resources

In Claude Desktop:

1. Start a new conversation
2. Type ”/” to see available tools
3. Verify “doc” tools appear
4. Test with a simple query: “What documentation is available?”

Test Query

Try a test search:

Search the documentation for "installation"

Expected behavior:

• Client calls the search_documentation tool
• Returns relevant results from your documentation
• Shows source files and similarity scores

Troubleshooting

Server Not Appearing

Symptoms: MCP server doesn’t show up in the client

Solutions:

1. Verify JSON syntax is valid (no trailing commas, proper quotes)
2. Check file path is correct
3. Ensure proper file permissions (readable)
4. Restart the client completely (quit and relaunch)

Connection Refused

Symptoms: “Connection refused” or “Cannot connect” errors

Solutions:

1. Verify server is running: curl http://localhost:3000/health
2. Check correct host and port in URL
3. For Docker: Use host.docker.internal (macOS/Windows) or 172.17.0.1 (Linux)
4. Check firewall settings

Authentication Errors

Symptoms: “Unauthorized” or “Invalid API key” errors

Solutions:

1. Verify Authorization header is correctly formatted
2. Check API key matches the one in .env
3. Ensure no extra spaces or line breaks in the key
4. Restart both server and client after changes

Tools Not Working

Symptoms: Tools appear but don’t return results

Solutions:

1. Check server logs for errors
2. Verify S3 credentials are correct
3. Ensure documents are indexed: run refresh_index
4. Check network connectivity to S3

Resources Not Appearing

Symptoms: No resources listed in the client

Solutions:

1. Verify files are indexed (check server logs)
2. Run refresh_index to synchronize
3. Check S3 bucket contains .md files
4. Ensure correct bucket name in .env

Configuration Examples

Development Setup

{
  "mcpServers": {
    "local-docs": {
      "type": "streamable-http",
      "url": "http://127.0.0.1:3000/mcp",
      "note": "Local development documentation"
    }
  }
}

Production Setup

{
  "mcpServers": {
    "prod-docs": {
      "type": "streamable-http",
      "url": "https://mcp.company.com/mcp",
      "headers": {
        "Authorization": "Bearer prod-api-key-here"
      },
      "note": "Production documentation server"
    }
  }
}

Multi-Environment Setup

{
  "mcpServers": {
    "dev-docs": {
      "type": "streamable-http",
      "url": "http://127.0.0.1:3000/mcp",
      "note": "Development documentation"
    },
    "staging-docs": {
      "type": "streamable-http",
      "url": "https://mcp-staging.company.com/mcp",
      "headers": {
        "Authorization": "Bearer staging-key"
      },
      "note": "Staging documentation"
    },
    "prod-docs": {
      "type": "streamable-http",
      "url": "https://mcp.company.com/mcp",
      "headers": {
        "Authorization": "Bearer prod-key"
      },
      "note": "Production documentation"
    }
  }
}

Advanced Configuration

Custom Timeouts

Some clients support timeout configuration:

{
  "mcpServers": {
    "doc": {
      "type": "streamable-http",
      "url": "http://127.0.0.1:3000/mcp",
      "timeout": 30000,
      "note": "30 second timeout"
    }
  }
}

Proxy Configuration

If behind a corporate proxy:

{
  "mcpServers": {
    "doc": {
      "type": "streamable-http",
      "url": "http://127.0.0.1:3000/mcp",
      "proxy": "http://proxy.company.com:8080"
    }
  }
}

Best Practices

Naming

Use descriptive names for multiple servers:

{
  "mcpServers": {
    "product-docs": { ... },
    "api-docs": { ... },
    "internal-wiki": { ... }
  }
}

Notes

Always add a note field to document the purpose:

{
  "note": "S3 Documentation RAG Server - Product Documentation"
}

Security

• ✅ Use Authorization header for authentication (not query parameters)
• ✅ Enable authentication for remote servers
• ✅ Use different API keys per environment
• ❌ Never commit API keys to version control

Next Steps

• Learn about MCP Tools
• Explore MCP Resources
• Understand the architecture